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Examples
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Globally, orthologies of the cnidarian sequences with their bilaterian counterparts are clearer for the "anterior" groups HOX1 and HOX2 (Hox) and GSX (ParaHox) than for the "posterior" Hox and ParaHox groups, cnidarian sequences branching in paraphyly in the latters.
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By integrating phylogenetics of novel vtg transcripts from old and modern teleosts with syntenic analyses of all available genomic variants of non-metatherian vertebrates we identify the gene orthologies between the Sarcopterygii (tetrapod branch) and Actinopterygii (fish branch).
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